Uses of Enum Class
org.forester.evoinference.matrix.character.CharacterStateMatrix.BinaryStates
Packages that use CharacterStateMatrix.BinaryStates
Package
Description
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Uses of CharacterStateMatrix.BinaryStates in org.forester.evoinference.matrix.character
Methods in org.forester.evoinference.matrix.character that return CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static CharacterStateMatrix.BinaryStates[]CharacterStateMatrix.BinaryStates.values()Returns an array containing the constants of this enum class, in the order they are declared. -
Uses of CharacterStateMatrix.BinaryStates in org.forester.evoinference.parsimony
Methods in org.forester.evoinference.parsimony that return types with arguments of type CharacterStateMatrix.BinaryStatesMethod parameters in org.forester.evoinference.parsimony with type arguments of type CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionvoidDolloParsimony.execute(Phylogeny p, CharacterStateMatrix<CharacterStateMatrix.BinaryStates> external_node_states_matrix) -
Uses of CharacterStateMatrix.BinaryStates in org.forester.io.parsers.nexus
Methods in org.forester.io.parsers.nexus that return types with arguments of type CharacterStateMatrix.BinaryStates -
Uses of CharacterStateMatrix.BinaryStates in org.forester.surfacing
Methods in org.forester.surfacing that return types with arguments of type CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionDomainParsimonyCalculator.createMatrixOfBinaryDomainCombinationPresenceOrAbsence(List<GenomeWideCombinableDomains> gwcd_list) DomainParsimonyCalculator.createMatrixOfDomainPresenceOrAbsence(List<GenomeWideCombinableDomains> gwcd_list, SortedSet<String> positive_filter) DomainParsimonyCalculator.createMatrixOfSecondaryFeatureBinaryDomainCombinationPresenceOrAbsence(List<GenomeWideCombinableDomains> gwcd_list, Map<String, String> domain_id_to_second_features_map) DomainParsimonyCalculator.getInternalStatesMatrix()Method parameters in org.forester.surfacing with type arguments of type CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionvoidDomainParsimonyCalculator.executeOnGivenBinaryStatesMatrix(CharacterStateMatrix<CharacterStateMatrix.BinaryStates> binary_states_matrix, String[] character_labels)