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elastix::ConjugateGradient< TElastix > Class Template Reference

#include <elxConjugateGradient.h>

Detailed Description

template<typename TElastix>
class elastix::ConjugateGradient< TElastix >

An optimizer based on the itk::GenericConjugateGradientOptimizer.

A ConjugateGradient optimizer, using the itk::MoreThuenteLineSearchOptimizer. Different conjugate gradient methods can be selected with this optimizer.

This optimizer support the NewSamplesEveryIteration option. It requests new samples for the computation of each search direction (not during the line search). Actually this makes no sense for a conjugate gradient optimizer. So, think twice before using the NewSamplesEveryIteration option.

The parameters used in this class are:

Parameters

Optimizer: Select this optimizer as follows:
(Optimizer "ConjugateGradient")

GenerateLineSearchIterations: Whether line search iteration should be counted as elastix-iterations.
example: (GenerateLineSearchIterations "true")
Can only be specified for all resolutions at once.
Default value: "false".

MaximumNumberOfIterations: The maximum number of iterations in each resolution.
example: (MaximumNumberOfIterations 100 100 50)
Default value: 100.

MaximumNumberOfLineSearchIterations: The maximum number of iterations in each resolution.
example: (MaximumNumberOfIterations 10 10 5)
Default value: 10.

StepLength: Set the length of the initial step tried by the itk::MoreThuenteLineSearchOptimizer.
example: (StepLength 2.0 1.0 0.5)
Default value: 1.0.

LineSearchValueTolerance: Determine the Wolfe conditions that the itk::MoreThuenteLineSearchOptimizer tries to satisfy.
example: (LineSearchValueTolerance 0.0001 0.0001 0.0001)
Default value: 0.0001.

LineSearchGradientTolerance: Determine the Wolfe conditions that the itk::MoreThuenteLineSearchOptimizer tries to satisfy.
example: (LineSearchGradientTolerance 0.9 0.9 0.9)
Default value: 0.9.

ValueTolerance: Stopping criterion. See the documentation of the itk::GenericConjugateGradientOptimizer for more information.
example: (ValueTolerance 0.001 0.0001 0.000001)
Default value: 0.00001.

GradientMagnitudeTolerance: Stopping criterion. See the documentation of the itk::GenericConjugateGradientOptimizer for more information.
example: (GradientMagnitudeTolerance 0.001 0.0001 0.000001)
Default value: 0.000001.

ConjugateGradientType: a string that defines how 'beta' is computed in each resolution. The following methods are implemented: "SteepestDescent", "FletcherReeves", "PolakRibiere", "DaiYuan", "HestenesStiefel", and "DaiYuanHestenesStiefel". "SteepestDescent" simply sets beta=0. See the source code of the GenericConjugateGradientOptimizer for more information.
example: (ConjugateGradientType "FletcherReeves" "PolakRibiere")
Default value: "DaiYuanHestenesStiefel".

StopIfWolfeNotSatisfied: Whether to stop the optimisation if in one iteration the Wolfe conditions can not be satisfied by the itk::MoreThuenteLineSearchOptimizer.
In general it is wise to do so.
example: (StopIfWolfeNotSatisfied "true" "false")
Default value: "true".

Definition at line 91 of file elxConjugateGradient.h.

Inheritance diagram for elastix::ConjugateGradient< TElastix >:

Public Types

using ConstPointer = itk::SmartPointer<const Self>
using EventPassThroughPointer = typename EventPassThroughType::Pointer
using EventPassThroughType = itk::ReceptorMemberCommand<Self>
using ITKBaseType = typename Superclass2::ITKBaseType
using LineOptimizerPointer = LineOptimizerType::Pointer
using LineOptimizerType = itk::MoreThuenteLineSearchOptimizer
using Pointer = itk::SmartPointer<Self>
using Self = ConjugateGradient
enum class  StopConditionType
using Superclass1 = GenericConjugateGradientOptimizer
using Superclass2 = OptimizerBase<TElastix>
Public Types inherited from itk::GenericConjugateGradientOptimizer
using BetaDefinitionMapType = std::map<BetaDefinitionType, ComputeBetaFunctionType>
using BetaDefinitionType = std::string
using ComputeBetaFunctionType
using ConstPointer = SmartPointer<const Self>
using LineSearchOptimizerPointer = LineSearchOptimizerType::Pointer
using LineSearchOptimizerType = LineSearchOptimizer
using Pointer = SmartPointer<Self>
using ScaledCostFunctionType
using ScalesType
using Self = GenericConjugateGradientOptimizer
enum class  StopConditionType : unsigned int {
  MetricError , LineSearchError , MaximumNumberOfIterations , GradientMagnitudeTolerance ,
  ValueTolerance , InfiniteBeta , Unknown
}
using Superclass = ScaledSingleValuedNonLinearOptimizer
Public Types inherited from itk::ScaledSingleValuedNonLinearOptimizer
using ConstPointer = SmartPointer<const Self>
using Pointer = SmartPointer<Self>
using ScaledCostFunctionPointer = ScaledCostFunctionType::Pointer
using ScaledCostFunctionType = ScaledSingleValuedCostFunction
using ScalesType = NonLinearOptimizer::ScalesType
using Self = ScaledSingleValuedNonLinearOptimizer
using Superclass = SingleValuedNonLinearOptimizer
Public Types inherited from elastix::OptimizerBase< TElastix >
using ElastixType
using ITKBaseType = itk::Optimizer
using ParametersType = typename ITKBaseType::ParametersType
using RegistrationType
using Self = OptimizerBase
using Superclass = BaseComponentSE<TElastix>
Public Types inherited from elastix::BaseComponentSE< TElastix >
using ElastixType = TElastix
using RegistrationType = typename ElastixType::RegistrationBaseType
using Self = BaseComponentSE
using Superclass = BaseComponent

Public Member Functions

void AfterEachIteration () override
void AfterEachResolution () override
void AfterRegistration () override
void BeforeEachResolution () override
void BeforeRegistration () override
 elxClassNameMacro ("ConjugateGradient")
virtual bool GetStartLineSearch () const
 ITK_DISALLOW_COPY_AND_MOVE (ConjugateGradient)
 itkOverrideGetNameOfClassMacro (ConjugateGradient)
void StartOptimization () override
Public Member Functions inherited from itk::GenericConjugateGradientOptimizer
virtual const BetaDefinitionTypeGetBetaDefinition ()
virtual const DerivativeType & GetCurrentGradient ()
virtual unsigned long GetCurrentIteration () const
virtual double GetCurrentStepLength () const
virtual MeasureType GetCurrentValue () const
virtual double GetGradientMagnitudeTolerance () const
virtual bool GetInLineSearch () const
virtual unsigned long GetMaximumNumberOfIterations () const
virtual unsigned long GetMaxNrOfItWithoutImprovement () const
virtual const StopConditionTypeGetStopCondition ()
virtual double GetValueTolerance () const
 ITK_DISALLOW_COPY_AND_MOVE (GenericConjugateGradientOptimizer)
 itkGetModifiableObjectMacro (LineSearchOptimizer, LineSearchOptimizerType)
 itkOverrideGetNameOfClassMacro (GenericConjugateGradientOptimizer)
virtual void ResumeOptimization ()
void SetBetaDefinition (const BetaDefinitionType &arg)
virtual void SetGradientMagnitudeTolerance (double _arg)
virtual void SetLineSearchOptimizer (LineSearchOptimizerType *_arg)
virtual void SetMaximumNumberOfIterations (unsigned long _arg)
virtual void SetMaxNrOfItWithoutImprovement (unsigned long arg)
virtual void SetValueTolerance (double _arg)
void StartOptimization () override
virtual void StopOptimization ()
Public Member Functions inherited from itk::ScaledSingleValuedNonLinearOptimizer
const ParametersType & GetCurrentPosition () const override
virtual bool GetMaximize () const
virtual const ScaledCostFunctionTypeGetScaledCostFunction ()
virtual const ParametersType & GetScaledCurrentPosition ()
bool GetUseScales () const
virtual void InitializeScales ()
 ITK_DISALLOW_COPY_AND_MOVE (ScaledSingleValuedNonLinearOptimizer)
 itkOverrideGetNameOfClassMacro (ScaledSingleValuedNonLinearOptimizer)
virtual void MaximizeOff ()
virtual void MaximizeOn ()
void SetCostFunction (CostFunctionType *costFunction) override
virtual void SetMaximize (bool _arg)
virtual void SetUseScales (bool arg)
Public Member Functions inherited from elastix::OptimizerBase< TElastix >
void AfterRegistrationBase () override
void BeforeEachResolutionBase () override
ITKBaseTypeGetAsITKBaseType ()
const ITKBaseTypeGetAsITKBaseType () const
 ITK_DISALLOW_COPY_AND_MOVE (OptimizerBase)
 itkOverrideGetNameOfClassMacro (OptimizerBase)
virtual void SetCurrentPositionPublic (const ParametersType &param)
virtual void SetSinusScales (double amplitude, double frequency, unsigned long numberOfParameters)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void AddTargetCellToIterationInfo (const char *const name)
const ConfigurationGetConfiguration () const
ElastixTypeGetElastix () const
auto & GetIterationInfoAt (const char *const name)
itk::Statistics::MersenneTwisterRandomVariateGenerator & GetRandomVariateGenerator ()
RegistrationTypeGetRegistration () const
 ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
void RemoveTargetCellFromIterationInfo (const char *const name)
void SetConfiguration (const Configuration *_arg)
void SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIterationBase ()
virtual void AfterEachResolutionBase ()
virtual int BeforeAll ()
virtual int BeforeAllBase ()
virtual void BeforeRegistrationBase ()
virtual const char * elxGetClassName () const
const char * GetComponentLabel () const
 ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
 itkVirtualGetNameOfClassMacro (BaseComponent)
void SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions

static Pointer New ()
Static Public Member Functions inherited from itk::GenericConjugateGradientOptimizer
static Pointer New ()
Static Public Member Functions inherited from itk::ScaledSingleValuedNonLinearOptimizer
static Pointer New ()
Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent>
static auto AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
static void InitializeElastixExecutable ()
static bool IsElastixLibrary ()

Protected Member Functions

 ConjugateGradient ()
virtual std::string DeterminePhase () const
virtual std::string GetLineSearchStopCondition () const
void LineSearch (const ParametersType searchDir, double &step, ParametersType &x, MeasureType &f, DerivativeType &g) override
bool TestConvergence (bool firstLineSearchDone) override
 ~ConjugateGradient () override=default
Protected Member Functions inherited from itk::GenericConjugateGradientOptimizer
void AddBetaDefinition (const BetaDefinitionType &name, ComputeBetaFunctionType function)
virtual double ComputeBeta (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
double ComputeBetaDY (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
double ComputeBetaDYHS (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
double ComputeBetaFR (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
double ComputeBetaHS (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
double ComputeBetaPR (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
double ComputeBetaSD (const DerivativeType &previousGradient, const DerivativeType &gradient, const ParametersType &previousSearchDir)
virtual void ComputeSearchDirection (const DerivativeType &previousGradient, const DerivativeType &gradient, ParametersType &searchDir)
 GenericConjugateGradientOptimizer ()
virtual void LineSearch (const ParametersType searchDir, double &step, ParametersType &x, MeasureType &f, DerivativeType &g)
void PrintSelf (std::ostream &os, Indent indent) const override
virtual void SetInLineSearch (bool _arg)
 ~GenericConjugateGradientOptimizer () override=default
Protected Member Functions inherited from itk::ScaledSingleValuedNonLinearOptimizer
virtual void GetScaledDerivative (const ParametersType &parameters, DerivativeType &derivative) const
virtual MeasureType GetScaledValue (const ParametersType &parameters) const
virtual void GetScaledValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
void PrintSelf (std::ostream &os, Indent indent) const override
 ScaledSingleValuedNonLinearOptimizer ()
void SetCurrentPosition (const ParametersType &param) override
virtual void SetScaledCurrentPosition (const ParametersType &parameters)
 ~ScaledSingleValuedNonLinearOptimizer () override=default
Protected Member Functions inherited from elastix::OptimizerBase< TElastix >
virtual bool GetNewSamplesEveryIteration () const
 OptimizerBase ()=default
virtual void SelectNewSamples ()
 ~OptimizerBase () override=default
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()=default
 ~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()=default
virtual ~BaseComponent ()=default

Protected Attributes

LineOptimizerPointer m_LineOptimizer
Protected Attributes inherited from itk::GenericConjugateGradientOptimizer
BetaDefinitionType m_BetaDefinition {}
BetaDefinitionMapType m_BetaDefinitionMap {}
DerivativeType m_CurrentGradient {}
unsigned long m_CurrentIteration { 0 }
double m_CurrentStepLength { 0.0 }
MeasureType m_CurrentValue { 0.0 }
bool m_InLineSearch { false }
bool m_PreviousGradientAndSearchDirValid { false }
bool m_Stop { false }
StopConditionType m_StopCondition { StopConditionType::Unknown }
bool m_UseDefaultMaxNrOfItWithoutImprovement { true }
Protected Attributes inherited from itk::ScaledSingleValuedNonLinearOptimizer
ScaledCostFunctionPointer m_ScaledCostFunction {}
ParametersType m_ScaledCurrentPosition {}
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer m_Configuration {}
itk::WeakPointer< TElastix > m_Elastix {}
RegistrationTypem_Registration {}

Private Member Functions

void InvokeIterationEvent (const itk::EventObject &event)

Private Attributes

 elxOverrideGetSelfMacro
EventPassThroughPointer m_EventPasser
bool m_GenerateLineSearchIterations
double m_SearchDirectionMagnitude
bool m_StartLineSearch
bool m_StopIfWolfeNotSatisfied
bool m_WolfeIsStopCondition

Additional Inherited Members

Protected Types inherited from elastix::OptimizerBase< TElastix >
using SettingsVectorType = typename std::vector<SettingsType>
Static Protected Member Functions inherited from elastix::OptimizerBase< TElastix >
static void PrintSettingsVector (const SettingsVectorType &settings)

Member Typedef Documentation

◆ ConstPointer

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 103 of file elxConjugateGradient.h.

◆ EventPassThroughPointer

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::EventPassThroughPointer = typename EventPassThroughType::Pointer

Definition at line 134 of file elxConjugateGradient.h.

◆ EventPassThroughType

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::EventPassThroughType = itk::ReceptorMemberCommand<Self>

Definition at line 133 of file elxConjugateGradient.h.

◆ ITKBaseType

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 128 of file elxConjugateGradient.h.

◆ LineOptimizerPointer

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::LineOptimizerPointer = LineOptimizerType::Pointer

Definition at line 132 of file elxConjugateGradient.h.

◆ LineOptimizerType

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::LineOptimizerType = itk::MoreThuenteLineSearchOptimizer

Extra typedefs

Definition at line 131 of file elxConjugateGradient.h.

◆ Pointer

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 102 of file elxConjugateGradient.h.

◆ Self

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::Self = ConjugateGradient

Standard ITK.

Definition at line 99 of file elxConjugateGradient.h.

◆ Superclass1

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::Superclass1 = GenericConjugateGradientOptimizer

Definition at line 100 of file elxConjugateGradient.h.

◆ Superclass2

template<typename TElastix>
using elastix::ConjugateGradient< TElastix >::Superclass2 = OptimizerBase<TElastix>

Definition at line 101 of file elxConjugateGradient.h.

Member Enumeration Documentation

◆ StopConditionType

template<typename TElastix>
enum class itk::GenericConjugateGradientOptimizer::StopConditionType : unsigned int
strong

Definition at line 71 of file itkGenericConjugateGradientOptimizer.h.

Constructor & Destructor Documentation

◆ ConjugateGradient()

template<typename TElastix>
elastix::ConjugateGradient< TElastix >::ConjugateGradient ( )
protected

◆ ~ConjugateGradient()

template<typename TElastix>
elastix::ConjugateGradient< TElastix >::~ConjugateGradient ( )
overrideprotecteddefault

Member Function Documentation

◆ AfterEachIteration()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::AfterEachIteration ( )
overridevirtual

Reimplemented from elastix::BaseComponent.

◆ AfterEachResolution()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::AfterEachResolution ( )
overridevirtual

Reimplemented from elastix::BaseComponent.

◆ AfterRegistration()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::AfterRegistration ( )
overridevirtual

Reimplemented from elastix::BaseComponent.

◆ BeforeEachResolution()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::BeforeEachResolution ( )
overridevirtual

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::BeforeRegistration ( )
overridevirtual

Methods to set parameters and print output at different stages in the registration process.

Reimplemented from elastix::BaseComponent.

◆ DeterminePhase()

template<typename TElastix>
virtual std::string elastix::ConjugateGradient< TElastix >::DeterminePhase ( ) const
protectedvirtual

Generate a string, representing the phase of optimisation (line search, main)

◆ elxClassNameMacro()

template<typename TElastix>
elastix::ConjugateGradient< TElastix >::elxClassNameMacro ( "ConjugateGradient< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific optimizer.
example: (Optimizer "ConjugateGradient")

◆ GetLineSearchStopCondition()

template<typename TElastix>
virtual std::string elastix::ConjugateGradient< TElastix >::GetLineSearchStopCondition ( ) const
protectedvirtual

Convert the line search stop condition to a string

◆ GetStartLineSearch()

template<typename TElastix>
virtual bool elastix::ConjugateGradient< TElastix >::GetStartLineSearch ( ) const
virtual

◆ InvokeIterationEvent()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::InvokeIterationEvent ( const itk::EventObject & event)
private

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<typename TElastix>
elastix::ConjugateGradient< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( ConjugateGradient< TElastix > )

◆ itkOverrideGetNameOfClassMacro()

template<typename TElastix>
elastix::ConjugateGradient< TElastix >::itkOverrideGetNameOfClassMacro ( ConjugateGradient< TElastix > )

Run-time type information (and related methods).

◆ LineSearch()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::LineSearch ( const ParametersType searchDir,
double & step,
ParametersType & x,
MeasureType & f,
DerivativeType & g )
overrideprotected

Call the superclass' implementation. If an itk::ExceptionObject is caught, because the line search optimizer tried a too big step, the exception is printed, but ignored further. The optimizer stops, but elastix just goes on to the next resolution.

◆ New()

template<typename TElastix>
Pointer elastix::ConjugateGradient< TElastix >::New ( )
static

Method for creation through the object factory.

◆ StartOptimization()

template<typename TElastix>
void elastix::ConjugateGradient< TElastix >::StartOptimization ( )
override

Check if any scales are set, and set the UseScales flag on or off; after that call the superclass' implementation

◆ TestConvergence()

template<typename TElastix>
bool elastix::ConjugateGradient< TElastix >::TestConvergence ( bool firstLineSearchDone)
overrideprotectedvirtual

Reimplement the superclass. Calls the superclass' implementation and checks if the MoreThuente line search routine has stopped with Wolfe conditions satisfied.

Reimplemented from itk::GenericConjugateGradientOptimizer.

Member Data Documentation

◆ elxOverrideGetSelfMacro

template<typename TElastix>
elastix::ConjugateGradient< TElastix >::elxOverrideGetSelfMacro
private

Definition at line 190 of file elxConjugateGradient.h.

◆ m_EventPasser

template<typename TElastix>
EventPassThroughPointer elastix::ConjugateGradient< TElastix >::m_EventPasser
private

Definition at line 195 of file elxConjugateGradient.h.

◆ m_GenerateLineSearchIterations

template<typename TElastix>
bool elastix::ConjugateGradient< TElastix >::m_GenerateLineSearchIterations
private

Definition at line 198 of file elxConjugateGradient.h.

◆ m_LineOptimizer

template<typename TElastix>
LineOptimizerPointer elastix::ConjugateGradient< TElastix >::m_LineOptimizer
protected

Definition at line 164 of file elxConjugateGradient.h.

◆ m_SearchDirectionMagnitude

template<typename TElastix>
double elastix::ConjugateGradient< TElastix >::m_SearchDirectionMagnitude
private

Definition at line 196 of file elxConjugateGradient.h.

◆ m_StartLineSearch

template<typename TElastix>
bool elastix::ConjugateGradient< TElastix >::m_StartLineSearch
private

Definition at line 197 of file elxConjugateGradient.h.

◆ m_StopIfWolfeNotSatisfied

template<typename TElastix>
bool elastix::ConjugateGradient< TElastix >::m_StopIfWolfeNotSatisfied
private

Definition at line 199 of file elxConjugateGradient.h.

◆ m_WolfeIsStopCondition

template<typename TElastix>
bool elastix::ConjugateGradient< TElastix >::m_WolfeIsStopCondition
private

Definition at line 200 of file elxConjugateGradient.h.



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