Uses of Interface
jebl.evolution.coalescent.DemographicFunction
Packages that use DemographicFunction
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Uses of DemographicFunction in jebl.evolution.coalescent
Classes in jebl.evolution.coalescent that implement DemographicFunctionModifier and TypeClassDescriptionclassThis class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).classThis class models coalescent intervals for a constant population (parameter: N0=present-day population size).classThis class models exponential growth from an initial population size.classThis class models logistic growth from an initial population size.classclassThis class models exponential growth from an initial ancestral population size.classThis class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).classThis class models logistic growth from an initial exponential phase.classThis class models logistic growth.Methods in jebl.evolution.coalescent with parameters of type DemographicFunctionModifier and TypeMethodDescriptionstatic final doubleCoalescent.calculateLogLikelihood(IntervalList intervals, DemographicFunction demographicFunction) Calculates the log likelihood of this set of coalescent intervals, given a demographic model.static voidDemographicFunction.Utils.testConsistency(DemographicFunction demographicFunction, int steps, double maxTime) This function tests the consistency of the getIntensity and getInverseIntensity methods of this demographic model.Constructors in jebl.evolution.coalescent with parameters of type DemographicFunctionModifierConstructorDescriptionCoalescent(IntervalList intervals, DemographicFunction demographicFunction) Coalescent(RootedTree tree, DemographicFunction demographicFunction) -
Uses of DemographicFunction in jebl.evolution.treesimulation
Constructors in jebl.evolution.treesimulation with parameters of type DemographicFunctionModifierConstructorDescriptionCoalescentIntervalGenerator(DemographicFunction demographicFunction)