Uses of Class
jebl.evolution.sequences.CodonState
Packages that use CodonState
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Uses of CodonState in jebl.evolution.sequences
Fields in jebl.evolution.sequences declared as CodonStateModifier and TypeFieldDescriptionstatic final CodonState[]Codons.CANONICAL_STATESstatic final CodonStateCodons.GAP_STATEstatic final CodonState[]Codons.STATESstatic final CodonStateCodons.UNKNOWN_STATEMethods in jebl.evolution.sequences that return CodonStateModifier and TypeMethodDescriptionstatic CodonStateCodons.getGapState()static CodonStateCodons.getState(int index) static CodonStateGets the state object for the given code.static CodonStateCodons.getState(NucleotideState nucleotide1, NucleotideState nucleotide2, NucleotideState nucleotide3) static CodonStateCodons.getUnknownState()static CodonState[]Convert an array of nucleotide states into an array of codon statesstatic CodonState[]Codons.toStateArray(byte[] indexArray) static CodonState[]Codons.toStateArray(String sequenceString) Methods in jebl.evolution.sequences that return types with arguments of type CodonStateModifier and TypeMethodDescriptionGeneticCode.getCodonsForAminoAcid(AminoAcidState aminoAcidState) GeneticCode.getStartCodons()GeneticCode.getStopCodons()Methods in jebl.evolution.sequences with parameters of type CodonStateModifier and TypeMethodDescriptionGeneticCode.getTranslation(CodonState codonState) Returns the state associated with AminoAcid represented by codonState.static booleanCodons.isGap(CodonState state) booleanGeneticCode.isStartCodon(CodonState codonState) Deprecated.booleanGeneticCode.isStopCodon(CodonState codonState) Deprecated.static booleanCodons.isUnknown(CodonState state) static NucleotideState[]Codons.toNucleotides(CodonState state)