pappso::TracePlusCombiner Class Reference

#include <tracepluscombiner.h>

Inheritance diagram for pappso::TracePlusCombiner:

Public Member Functions
	TracePlusCombiner ()
	TracePlusCombiner (int decimal_places)
	TracePlusCombiner (const TracePlusCombiner &other)
	TracePlusCombiner (TracePlusCombinerCstSPtr other)
virtual	~TracePlusCombiner ()
virtual MapTrace &	combine (MapTrace &map_trace, const Trace &trace) const override
MapTrace &	combine (MapTrace &map_trace_out, const MapTrace &map_trace_in) const override
Public Member Functions inherited from pappso::TraceCombiner
	TraceCombiner ()
	TraceCombiner (int decimal_places)
	TraceCombiner (const TraceCombiner &other)
	TraceCombiner (TraceCombinerCstSPtr other)
virtual	~TraceCombiner ()
Public Member Functions inherited from pappso::MassDataCombinerInterface
	MassDataCombinerInterface (int decimal_places=-1)
virtual	~MassDataCombinerInterface ()
void	setDecimalPlaces (int value)
int	getDecimalPlaces () const
virtual MapTrace &	combine (MapTrace &map_trace, Iterator begin, Iterator end)

Friends
class	MassSpectrumPlusCombiner

Additional Inherited Members
Public Types inherited from pappso::MassDataCombinerInterface
using	Iterator = std::vector< const Trace * >::const_iterator
Protected Attributes inherited from pappso::MassDataCombinerInterface
int	m_decimalPlaces = -1
	Number of decimals to use for the keys (x values)

Detailed Description

Definition at line 26 of file tracepluscombiner.h.

Constructor & Destructor Documentation

TracePlusCombiner() [1/4]

pappso::TracePlusCombiner::TracePlusCombiner

(

)

Definition at line 23 of file tracepluscombiner.cpp.

                                     : TraceCombiner()
{
}

TracePlusCombiner() [2/4]

pappso::TracePlusCombiner::TracePlusCombiner

(

int

decimal_places

)

Definition at line 28 of file tracepluscombiner.cpp.

                                                       : TraceCombiner(decimal_places)
{
}

TracePlusCombiner() [3/4]

pappso::TracePlusCombiner::TracePlusCombiner

(

const TracePlusCombiner &

other

)

Definition at line 33 of file tracepluscombiner.cpp.

                                                                   : TraceCombiner(other)
{
}

TracePlusCombiner() [4/4]

pappso::TracePlusCombiner::TracePlusCombiner

(

TracePlusCombinerCstSPtr

other

)

Definition at line 38 of file tracepluscombiner.cpp.

                                                                   : TraceCombiner(other)
{
  qDebug();
}

~TracePlusCombiner()

pappso::TracePlusCombiner::~TracePlusCombiner ( )

virtual

Definition at line 44 of file tracepluscombiner.cpp.

{
}

Member Function Documentation

combine() [1/2]

MapTrace & pappso::TracePlusCombiner::combine ( MapTrace &  map_trace, const Trace &  trace  ) const

overridevirtual

Implements pappso::MassDataCombinerInterface.

Definition at line 50 of file tracepluscombiner.cpp.

{
  // qDebug() << "With m_decimalPlaces:" << m_decimalPlaces << "map trace size:" << map_trace.size()
  //          << "trace size:" << trace.size();
 
  if(!trace.size())
    return map_trace;
 
  for(auto &current_data_point : trace)
    {
 
      // If the data point is 0-intensity, then do nothing!
      if(!current_data_point.y)
        continue;
 
      double x = Utils::roundToDecimals(current_data_point.x, m_decimalPlaces);
 
      std::map<double, double>::iterator map_iterator;
 
      std::pair<std::map<pappso_double, pappso_double>::iterator, bool> result;
 
      result = map_trace.insert(std::pair<pappso_double, pappso_double>(x, current_data_point.y));
 
      if(result.second)
        {
          // qDebug() << " The element to insert was not there already, we added it.";
          // The new element was inserted, we have nothing to do.
        }
      else
        {
          // The key already existed! The item was not inserted. We need to
          // update the value.
 
          // qDebug() << " The element to insert was there already, we increment y.";
          result.first->second += current_data_point.y;
        }
    }
 
  // qDebug() << "Prior to returning map_trace, its size is:" << map_trace.size();
  return map_trace;
}

References pappso::MassDataCombinerInterface::m_decimalPlaces, pappso::Utils::roundToDecimals(), and pappso::x.

Referenced by combine(), and pappso::TimsDdaPrecursors::getQualifiedMs1MassSpectrumBySpectrumDescr().

combine() [2/2]

MapTrace & pappso::TracePlusCombiner::combine ( MapTrace &  map_trace_out, const MapTrace &  map_trace_in  ) const

overridevirtual

Implements pappso::MassDataCombinerInterface.

Definition at line 94 of file tracepluscombiner.cpp.

{
  // qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << " ()"
  //<< "map trace size:" << map_trace_out.size()
  //<< "trace size:" << trace.size();
 
  if(!map_trace_in.size())
    return map_trace_out;
 
  return combine(map_trace_out, map_trace_in.toTrace());
}

References combine(), and pappso::MapTrace::toTrace().

Friends And Related Symbol Documentation

MassSpectrumPlusCombiner

friend class MassSpectrumPlusCombiner

friend

Definition at line 29 of file tracepluscombiner.h.

---

The documentation for this class was generated from the following files:

• pappsomspp/core/processing/combiners/tracepluscombiner.h
• pappsomspp/core/processing/combiners/tracepluscombiner.cpp