obopsimodterm.h

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/*******************************************************************************
 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
 *
 * This file is part of the PAPPSOms++ library.
 *
 *     PAPPSOms++ is free software: you can redistribute it and/or modify
 *     it under the terms of the GNU General Public License as published by
 *     the Free Software Foundation, either version 3 of the License, or
 *     (at your option) any later version.
 *
 *     PAPPSOms++ is distributed in the hope that it will be useful,
 *     but WITHOUT ANY WARRANTY; without even the implied warranty of
 *     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *     GNU General Public License for more details.
 *
 *     You should have received a copy of the GNU General Public License
 *     along with PAPPSOms++.  If not, see <http://www.gnu.org/licenses/>.
 *
 ******************************************************************************/
 
#pragma once
 
#include <QRegularExpression>
#include "pappsomspp/export-import-config.h"
 
namespace pappso
{
 
class OboPsiMod;
class OboPsiMs;
class OboUnimod;
 
class PMSPP_LIB_DECL OboPsiModTerm
{
  friend OboPsiMod;
  friend OboPsiMs;
  friend OboUnimod;
 
  public:
  OboPsiModTerm();
  ~OboPsiModTerm();
  OboPsiModTerm(const OboPsiModTerm &);
  OboPsiModTerm &operator=(const OboPsiModTerm &);
 
  bool isValid() const;
  /** @brief tells if this term "is_a" another accession
   * @return bool if true
   */
  bool isA(const QString &accession) const;
 
 
  void setAccession(const QString &accession);
  const QString &getAccession() const;
 
  bool isUnimod() const;
 
  public:
  QString m_name;
  QString m_definition;
  QString m_psiModLabel;
  QString m_psiMsLabel;
  QString m_diffFormula;
  QString m_formula;
  QString m_origin;
 
  double m_diffMono;
  double m_massMono;
 
  QStringList m_isA;
 
  private:
  void parseLine(const QString &line);
  void clearTerm();
 
  static QRegularExpression m_firstParse;
  static QRegularExpression m_findExactPsiModLabel;
  static QRegularExpression m_findRelatedPsiMsLabel;
  static QRegularExpression m_firstParseUnimod;
  static QRegularExpression m_parseDefinition;
 
  private:
  QString m_accession;
  bool m_isUnimod = false;
};
 
} // namespace pappso
 
 
extern int oboPsiModTermMetaTypeId;