pappso::cbor::psm::PsmProtein Struct Reference

#include <psmproteinmap.h>

Public Attributes
std::shared_ptr< Protein >	protein_sp = nullptr
bool	isTarget = true
bool	isContaminant = false
QCborMap	cborEval

Detailed Description

Definition at line 44 of file psmproteinmap.h.

Member Data Documentation

cborEval

QCborMap pappso::cbor::psm::PsmProtein::cborEval

Definition at line 49 of file psmproteinmap.h.

isContaminant

bool pappso::cbor::psm::PsmProtein::isContaminant = false

Definition at line 48 of file psmproteinmap.h.

Referenced by pappso::cbor::psm::MzIdentMlReader::finalDebrief(), and pappso::cbor::psm::PsmProteinMap::readMap().

isTarget

bool pappso::cbor::psm::PsmProtein::isTarget = true

Definition at line 47 of file psmproteinmap.h.

Referenced by pappso::cbor::psm::PsmFileReaderBase::currentProteinRefListContainsDecoy(), pappso::cbor::psm::PsmFileReaderBase::currentProteinRefListContainsTarget(), pappso::cbor::psm::MzIdentMlReader::finalDebrief(), pappso::cbor::psm::SageTsvHandler::parseProteins(), pappso::cbor::psm::PsmSpecPeptidOms::proteinMapReady(), and pappso::cbor::psm::PsmProteinMap::readMap().

protein_sp

std::shared_ptr<Protein> pappso::cbor::psm::PsmProtein::protein_sp = nullptr

Definition at line 46 of file psmproteinmap.h.

Referenced by pappso::cbor::psm::MzIdentMlReader::finalDebrief(), pappso::cbor::psm::PsmProteinMap::insert(), pappso::cbor::psm::SageTsvHandler::parseProteins(), pappso::cbor::psm::PsmSpecPeptidOms::proteinMapReady(), pappso::cbor::psm::PsmProteinMap::readMap(), pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageReader::FastaSeq::setSequence().

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The documentation for this struct was generated from the following file:

• pappsomspp/core/processing/cbor/psm/psmproteinmap.h