#include <sagetsvhandler.h>

Public Attributes
int	rank = 0

int	label = 0

double	expmass = 0.0

double	calcmass = 0.0

int	charge = 0

std::size_t	peptide_len

int	missed_cleavages

int	semi_enzymatic

double	isotope_error

double	precursor_ppm

double	fragment_ppm

double	hyperscore

double	delta_next

double	delta_best

double	rt

double	aligned_rt

double	predicted_rt

double	delta_rt_model

double	ion_mobility

double	predicted_mobility

double	delta_mobility

std::size_t	matched_peaks

std::size_t	longest_b

std::size_t	longest_y

double	longest_y_pct

double	matched_intensity_pct

std::size_t	scored_candidates

double	poisson

double	sage_discriminant_score

double	posterior_error

double	spectrum_q

double	peptide_q

double	protein_q

double	ms2_intensity

Detailed Description

Definition at line 96 of file sagetsvhandler.h.

Member Data Documentation

◆ aligned_rt

double pappso::cbor::psm::SageTsvHandler::Line::aligned_rt

Definition at line 113 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ calcmass

double pappso::cbor::psm::SageTsvHandler::Line::calcmass = 0.0

Definition at line 101 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ charge

int pappso::cbor::psm::SageTsvHandler::Line::charge = 0

Definition at line 102 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::endLine(), pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ delta_best

double pappso::cbor::psm::SageTsvHandler::Line::delta_best

Definition at line 111 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ delta_mobility

double pappso::cbor::psm::SageTsvHandler::Line::delta_mobility

Definition at line 118 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ delta_next

double pappso::cbor::psm::SageTsvHandler::Line::delta_next

Definition at line 110 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ delta_rt_model

double pappso::cbor::psm::SageTsvHandler::Line::delta_rt_model

Definition at line 115 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ expmass

double pappso::cbor::psm::SageTsvHandler::Line::expmass = 0.0

Definition at line 100 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ fragment_ppm

double pappso::cbor::psm::SageTsvHandler::Line::fragment_ppm

Definition at line 108 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ hyperscore

double pappso::cbor::psm::SageTsvHandler::Line::hyperscore

Definition at line 109 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ ion_mobility

double pappso::cbor::psm::SageTsvHandler::Line::ion_mobility

Definition at line 116 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ isotope_error

double pappso::cbor::psm::SageTsvHandler::Line::isotope_error

Definition at line 106 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ label

int pappso::cbor::psm::SageTsvHandler::Line::label = 0

Definition at line 99 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ longest_b

std::size_t pappso::cbor::psm::SageTsvHandler::Line::longest_b

Definition at line 120 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ longest_y

std::size_t pappso::cbor::psm::SageTsvHandler::Line::longest_y

Definition at line 121 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ longest_y_pct

double pappso::cbor::psm::SageTsvHandler::Line::longest_y_pct

Definition at line 122 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ matched_intensity_pct

double pappso::cbor::psm::SageTsvHandler::Line::matched_intensity_pct

Definition at line 123 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ matched_peaks

std::size_t pappso::cbor::psm::SageTsvHandler::Line::matched_peaks

Definition at line 119 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ missed_cleavages

int pappso::cbor::psm::SageTsvHandler::Line::missed_cleavages

Definition at line 104 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ ms2_intensity

double pappso::cbor::psm::SageTsvHandler::Line::ms2_intensity

Definition at line 131 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ peptide_len

std::size_t pappso::cbor::psm::SageTsvHandler::Line::peptide_len

Definition at line 103 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ peptide_q

double pappso::cbor::psm::SageTsvHandler::Line::peptide_q

Definition at line 129 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ poisson

double pappso::cbor::psm::SageTsvHandler::Line::poisson

Definition at line 125 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ posterior_error

double pappso::cbor::psm::SageTsvHandler::Line::posterior_error

Definition at line 127 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ precursor_ppm

double pappso::cbor::psm::SageTsvHandler::Line::precursor_ppm

Definition at line 107 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ predicted_mobility

double pappso::cbor::psm::SageTsvHandler::Line::predicted_mobility

Definition at line 117 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ predicted_rt

double pappso::cbor::psm::SageTsvHandler::Line::predicted_rt

Definition at line 114 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ protein_q

double pappso::cbor::psm::SageTsvHandler::Line::protein_q

Definition at line 130 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ rank

int pappso::cbor::psm::SageTsvHandler::Line::rank = 0

Definition at line 98 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ rt

double pappso::cbor::psm::SageTsvHandler::Line::rt

Definition at line 112 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ sage_discriminant_score

double pappso::cbor::psm::SageTsvHandler::Line::sage_discriminant_score

Definition at line 126 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ scored_candidates

std::size_t pappso::cbor::psm::SageTsvHandler::Line::scored_candidates

Definition at line 124 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ semi_enzymatic

int pappso::cbor::psm::SageTsvHandler::Line::semi_enzymatic

Definition at line 105 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

◆ spectrum_q

double pappso::cbor::psm::SageTsvHandler::Line::spectrum_q

Definition at line 128 of file sagetsvhandler.h.

Referenced by pappso::cbor::psm::SageTsvHandler::recordLine(), and pappso::cbor::psm::SageTsvHandler::setCell().

The documentation for this struct was generated from the following file:

pappsomspp/core/processing/cbor/psm/sage/sagetsvhandler.h

Public Attributes

Detailed Description

Member Data Documentation

◆ aligned_rt

◆ calcmass

◆ charge

◆ delta_best

◆ delta_mobility

◆ delta_next

◆ delta_rt_model

◆ expmass

◆ fragment_ppm

◆ hyperscore

◆ ion_mobility

◆ isotope_error

◆ label

◆ longest_b

◆ longest_y

◆ longest_y_pct

◆ matched_intensity_pct

◆ matched_peaks

◆ missed_cleavages

◆ ms2_intensity

◆ peptide_len

◆ peptide_q

◆ poisson

◆ posterior_error

◆ precursor_ppm

◆ predicted_mobility

◆ predicted_rt

◆ protein_q

◆ rank

◆ rt

◆ sage_discriminant_score

◆ scored_candidates

◆ semi_enzymatic

◆ spectrum_q