xiccoord.cpp

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/**
 * \file pappsomspp/msrun/xiccoord/xiccoord.cpp
 * \date 22/04/2021
 * \author Olivier Langella
 * \brief XIC coordinate in MSrun
 */
 
 
/*******************************************************************************
 * Copyright (c) 2021 Olivier Langella
 *<Olivier.Langella@universite-paris-saclay.fr>.
 *
 * This file is part of the PAPPSOms++ library.
 *
 *     PAPPSOms++ is free software: you can redistribute it and/or modify
 *     it under the terms of the GNU General Public License as published by
 *     the Free Software Foundation, either version 3 of the License, or
 *     (at your option) any later version.
 *
 *     PAPPSOms++ is distributed in the hope that it will be useful,
 *     but WITHOUT ANY WARRANTY; without even the implied warranty of
 *     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *     GNU General Public License for more details.
 *
 *     You should have received a copy of the GNU General Public License
 *     along with PAPPSOms++.  If not, see <http://www.gnu.org/licenses/>.
 *
 ******************************************************************************/
 
 
#include "xiccoord.h"
#include <QVariant>
 
using namespace pappso;
 
pappso::XicCoord::XicCoord()
  : mzRange(pappso_double(1), PrecisionFactory::getPpmInstance(10.0)), rtTarget(0)
{
}
 
 
XicCoord::XicCoord(const XicCoord &other) : mzRange(other.mzRange), rtTarget(other.rtTarget)
{
  xicSptr = other.xicSptr;
}
 
XicCoord::~XicCoord()
{
}
 
pappso::XicCoordSPtr
pappso::XicCoord::initializeAndClone() const
{
  XicCoordSPtr xic_coord_sp = std::make_shared<XicCoord>(*this);
 
  xic_coord_sp.get()->xicSptr = std::make_shared<Xic>();
 
  return xic_coord_sp;
}
 
 
pappso::XicCoordSPtr
pappso::XicCoord::addition(const XicCoordSPtr &to_add) const
{
  XicCoordSPtr xic_coord_sp = std::make_shared<XicCoord>(*this);
 
  // xic_coord_sp.get()->xicSptr = nullptr;
 
  xic_coord_sp.get()->rtTarget += to_add.get()->rtTarget;
 
  xic_coord_sp.get()->mzRange += to_add.get()->mzRange;
 
  return xic_coord_sp;
}
 
XicCoordSPtr
XicCoord::multiplyBy(double number) const
{
  XicCoordSPtr xic_coord_sp = std::make_shared<XicCoord>(*this);
 
  // xic_coord_sp.get()->xicSptr = nullptr;
 
  xic_coord_sp.get()->rtTarget *= number;
  xic_coord_sp.get()->mzRange *= number;
 
  return xic_coord_sp;
}
 
pappso::XicCoordSPtr
pappso::XicCoord::divideBy(double number) const
{
  XicCoordSPtr xic_coord_sp = std::make_shared<XicCoord>(*this);
 
  // xic_coord_sp.get()->xicSptr = nullptr;
 
  xic_coord_sp.get()->rtTarget /= number;
  xic_coord_sp.get()->mzRange *= (double)((double)1 / number);
 
  return xic_coord_sp;
}
 
 
void
pappso::XicCoord::reset()
{
 
  xicSptr = nullptr;
 
  rtTarget = 0;
  mzRange  = MzRange(0.0, 0.0);
}
 
QString
pappso::XicCoord::toString() const
{
  return QString("mz=%1 rt=%2").arg(mzRange.toString()).arg(rtTarget);
}
 
 
const QVariant
pappso::XicCoord::getParam(XicCoordParam param [[maybe_unused]]) const
{
  return QVariant();
}
 
void
pappso::XicCoord::writeCborStream(QCborStreamWriter &cbor_writer) const
{
  cbor_writer.append(QLatin1String("xic_coord"));
  cbor_writer.startMap(2);
  cbor_writer.append(QLatin1String("mz_range"));
  cbor_writer.startArray(2);
  cbor_writer.append(mzRange.lower());
  cbor_writer.append(mzRange.upper());
  cbor_writer.endArray();
 
  cbor_writer.append(QLatin1String("rt"));
  cbor_writer.append(rtTarget);
 
  cbor_writer.endMap();
}