Package edu.msu.cme.rdp.classifier

Class ClassificationResult

java.lang.Object
edu.msu.cme.rdp.classifier.ClassificationResult
public class ClassificationResult extends Object
This class holds the classification results for a query sequence.

  • Constructor Details

    • ClassificationResult

      public ClassificationResult(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, List<RankAssignment> a, HierarchyVersion version)
      Creates a new instance of ClassificationResult. This class holds the classification results for a query sequence.

  • Method Details

    • getSequence

      public edu.msu.cme.rdp.readseq.readers.Sequence getSequence()
      Returns the query sequence

    • getAssignments

      public List<RankAssignment> getAssignments()
      Returns a list of RankAssignments. The assignments are returned in the order of taxonomic ranks, from the highest to the lowest.

    • getTrainsetNo

      public int getTrainsetNo()
      Returns the training set number of the taxonomy hierarchy from of the training file.

    • getHierarchyTrainsetNo

      public HierarchyVersion getHierarchyTrainsetNo()
      Returns the version of the taxonomy hierarchy from of the training file.

    • isReverse

      public boolean isReverse()