format_sam.hpp File Reference

Provides the seqan3::format_sam. More...

#include <iterator>
#include <ranges>
#include <string>
#include <vector>
#include <seqan3/alphabet/concept.hpp>
#include <seqan3/alphabet/views/to_char.hpp>
#include <seqan3/io/sam_file/detail/cigar.hpp>
#include <seqan3/io/sam_file/detail/format_sam_base.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/input_format_concept.hpp>
#include <seqan3/io/sam_file/output_options.hpp>
#include <seqan3/io/sam_file/sam_flag.hpp>
#include <seqan3/io/sam_file/sam_tag_dictionary.hpp>
#include <seqan3/io/sequence_file/input_format_concept.hpp>
#include <seqan3/io/sequence_file/output_options.hpp>
#include <seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp>
#include <seqan3/io/views/detail/istreambuf_view.hpp>
#include <seqan3/io/views/detail/take_until_view.hpp>
#include <seqan3/utility/detail/type_name_as_string.hpp>
#include <seqan3/utility/range/to.hpp>
#include <seqan3/utility/tuple/concept.hpp>
#include <seqan3/utility/views/slice.hpp>

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Classes
class	seqan3::format_sam
	The SAM format (tag). More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_sam.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>